BWC Data Server Project Presentations and Publications


 

Journal and Conference Papers

D. Agarwal, M. Humphrey, N. Beekwilder, K. Jackson, M. Goode, and C. van Ingen. "A data centered collabo\ ration portal to support global carbon-flux analysis." Concurrency and Computation: Practice and Experience - Successes in Furthering Scientific Discovery, Vol 22, Issue 17, pp 2323-2334, December 2010. doi: 10.1002/cpe.1600. LBNL-1827E.

Jie Li, Marty Humphrey, You-Wei Cheah, Youngryel Ryu, Deb Agarwal, Keith Jackson, Catharine van Ingen, "Fault Tolerance and Scaling in e-Science Cloud Applications: Observations from the Continuing Development of MODISAzure," escience, pp.246-253, 2010 IEEE Sixth International Conference on e-Science, 2010.

J. Li, D. Agarwal, M. Humphrey, C. van Ingen, K. Jackson, and Y. Ryu. eScience in the Cloud: A MODIS Satellite Data Reprojection and Reduction Pipeline in the Windows Azure Platforma. In Proceedings of the 24th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2010), Apr 19-23, 2010. Atlanta, Georgia.

M. Humphrey, D. Agarwal, and C. van Ingen. Fluxdata.org: Publication and Curation of Shared Scientific Climate and Earth Sciences Data. In Proceedings of the 5th IEEE international Conference on e-Science (e-science 2009). Dec 7-9, 2009. Oxford, UK.

"Publication and Curation of Large-Scale Shared Environmental Scientific Data,"
M. Humphrey, D. Agarwal, and C. van Ingen, Microsoft Technical Report, MSR-TR-2008-93, August 2008. Paper

"Fluxnet Synthesis Dataset Collaboration Infrastructure", Deb Agarwal, Marty Humphrey, Catharine van Ingen, Norm Beekwilder, Monte Goode, Keith Jackson, Matt Rodriguez, and Robin Weber, FluxLetter, Vol 1, Issue 1, 2008, pp. 5-7. (LBNL Tech Report LBNL-1273E)

"ENVIRONMENT: Environmental Monitoring Network for India,"
P. V. Sundareshwar, R. Murtugudde, G. Srinivasan, S. Singh, K. J. Ramesh, R. Ramesh, S. B. Verma, D. A garwal, D. Baldocchi, C. K. Baru, K. K. Baruah, G. R. Chowdhury, V. K. Dadhwal, C. B. S. Dutt, J. Fuentes, Pra bhat K. Gupta, W. W. Hargrove, M. Howard, C. S. Jha, S. Lal, W. K. Michener, A. P. Mitra, J. T. Morris, R. R. Myneni, M. Naja, R. Nemani, R. Purvaja, S. Raha, S. K. Santhana Vanan, M. Sharma, A. Subramaniam, R. Sukumar, R. R. Twilley, and P. R. Zimmerman (13 April 2007) Science 316 (5822), 204. [DOI: 10.1126/science.1137417]. PDF, Supporting Material

Presentations and Posters

"Fluxdata.org FLUXNET Dataset Synthesis Support," Deb Agarwal, presentation to AmeriFlux and NACP Joint Meeting, New Orleans, LA (31 January 2011).

"Developing Data Analysis Infrastructure to Support Regional and Global Scale Synthesis," Deb Agarwal, Catharine van Ingen, Marty Humphrey, Monte Goode, Jie Li, Youngryel Ryu, Arie Shoshani, Boris Fabyshenko, Alex Romosan, Jim Hunt, and Thomas Moran, EOS Transactions American Geophysical Union Fall Meeting, Abstract H23L-08, San Francisco, California (14 December 2010).

"Comparing Annual Evapotranspiration Estimates at the Watershed Scale Using Geospatial Satellite and Rainfall-Runoff Data," Thomas Moran, Youngryel Ryu, Deb Agarwal, Dennis Baldocchi, Jim Hunt, Catharine van Ingen, EOS Transactions American Geophysical Union Fall Meeting, Abstract B41C-0318 Poster, San Francisco, California (December 2010).

"MODIS-based global terrestrial estimates of gross primary productivity and evapotranspiration," Youngryel Ryu, Dennis BaldocchiH. Kobayashi, Jie Li, Catharine van Ingen, Deb Agarwal, Keith Jackson, Marty Humphrey, EOS Transactions American Geophysical Union Fall Meeting, Abstract B11D-0407 Poster, San Francisco, California (December 2010).

"Life In the Cloud: TeraPixel and ModisAzure," Catharine van Ingen, presentation to CSIRO, Canberra, Australia (26 October 2010).

"Scaling Science: Breathing Earth Science Simulator," Catharine van Ingen with thanks to Youngryel Ryu and Dennis Baldocchi, presentation to CSIRO, Canberra, Australia (26 October 2010).

"Satellites, Sensors, and Synthesis," Catharine van Ingen, presentation to NICTA, Canberra, Australia (25 October 2010).

"Life in the Cloud: ModisAzure," Catharine van Ingen, Microsoft External Research Seminar (25 September 2010).

"Enabling Science in the Cloud: A Remote Sensing Data Processing Service for Environmental Science Analysis," Catharine van Ingen, Jie Li, Youngryel Ryu, Marty Humphrey, Deb Agarwal, Keith Jackson, Eos Trans. American Geophysical Union, Meeting of the Americas, Abstract IN21A-07, Foz do Iguassu, Brazil, (August 2010).

"FLUXDATA.ORG: A Collaborative Data Sharing Portal For Global Carbon-Flux Analysis," Catharine van Ingen, Deb Agarwal, Marty Humphrey, Monte Goode, Norm Beekwilder, Dario Papale, Markus Reichstein, Eos Trans. American Geophysical Union, Meeting of the Americas, Abstract IN23A-06, Foz do Iguassu, Brazil, (August 2010).

"Building a Global Tree Inventory Database," You-Wei Cheah, Microsoft Research Environmental Summit, Redmond, Washington (July 2010).

"Bridging the Gaps: Satellite to Science and Desktop To the Cloud," C. van Ingen, Microsoft Research Environmental Summit, Redmond, Washington (July 2010).

"Environmental Data Management," Deb Agarwal, Microsoft Research Faculty Summit, Redmond, Washington (July 2010).

"Azure for Science Research : From Desktop to the Cloud," Roger Barga and Catharine van Ingen, Microsoft Research Faculty Summit, Redmond, Washington (July 2010).

"Bridging the Gaps: Satellite to Science and Desktop To the Cloud," C. van Ingen, Microsoft Research Faculty Summit, Guaruja, Brazil (May 2010).

"The Alaska Soil Carbon Database: A Powerful Database for Soil Carbon Synthesis and Modeling," K. D. Johnson, D. Agarwal, J. W. Harden, D. McGuire, C. Swanston, C. van Ingen, Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract B51F-0368, San Francisco, CA (Dec 2009).

"A Cloud Computing Service for Remote Sensing Data Reprojection and Science Reduction," Jie Li, Youngryel Ryu, Keith Jackson, Deb Agarwal, Marty Humphrey, Catharine van Ingen, Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract H51H-0857, San Francisco, CA (Dec 2009),(poster).

"Process-based estimates of terrestrial CO2 assimilation and evapotranspiration using MODIS at continental scale: a bottom-up approach," Youngryel Ryu, Dennis Baldocchi, Jie Li, Keith Jackson, Catherine van Ingen, Deb Agarwal, Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract B51B-0308, San Francisco, CA (Dec 2009).

"Experiences Developing a Collaborative Data Sharing Portal for FLUXNET," Deb Agarwal, Marty Humphrey, Norm Beekwilder, Catharine van Ingen, Dario Papale, Markus Reichstein, and Dennis Baldocchi, Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract IN31B-1007, San Francisco, CA (Dec 2009), (poster)

"Beyond Sensors: Curating Ancillary Data for Carbon Climate Science," C. van Ingen, Australia (November 2009).

"Beyond Sensors: Curating Ancillary Data for Carbon Climate Science," C. van Ingen, Microsoft E-Science Meeting, Pittsburgh, PA (October 2009).

"Construction of a MODIS Scientific Data Reprojection and Reduction Pipeline in Windows Azure," J. Li, Microsoft E-Science Meeting, Pittsburgh, PA (October 2009).

"Data Mining for the Development of Scaling Laws in Hydrology," J. Hunt, Microsoft E-Science All-Hands, Seattle, WA (March 2009).

"Deriving Daytime Variables From the AmeriFlux Standard Eddy Covariance Data Set," C. van Ingen, D. Agarwal, M. Humphrey, and  J. Li Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract B31A, San Francisco, CA (Dec 17, 2008), (pptx)

"Interaction Support for the Global FLUXNET Data Set," D. Agarwal, M. Humphrey, and N. Beekwilder, M. Goode, K. Jackson, R. Weber, C. van Ingen, and D. Baldocchi, Eos Trans. American Geophysical Union, Fall Meet. Suppl., Abstract IN23B, San Francisco, CA (Dec 16, 2008), (pptx)

"A Data Centered Collaboration Portal to Support Global Carbon-Flux Analysis,"
D. Agarwal, M. Humphrey, and N. Beekwilder, Microsoft e-Science Meeting, Indianapolis, IN, December 8-9, 2008. Extended Abstract, Presentation

"Berkeley Water Center Eco-Science Infrastructure,"
D. Agarwal, C. van Ingen, and M. Humphrey, Microsoft Booth at SC08, Austin, TX, November 19, 2008.

"Environmental Data Management: Synthesis of Hydrologic Data using the California Data Cube,"
J. Hunt, D. Agarwal, and C. van Ingen, BWC and Innovation Center Denmark Meeting, October 2008.

"Environmental Science as a data intensive Science,"
C. van Ingen, BWC and Innovation Center Denmark Meeting, October 2008.

"Berkeley Water Center Enabling Eco-Science Data Analysis,"
D. Agarwal, C. van Ingen, B. Beran, M. Goode, K. Jackson, and R. Weber, BWC and Innovation Center Denmark Meeting, October 2008.

"Berkeley Water Center Eco-Science Infrastructure,"
D. Agarwal, C. van Ingen, B. Beran, M. Goode, K. Jackson, and R. Weber, UC Berkeley Hydrolunch, October 2008.

"Synthesis of Hydrologic Data Reveals Rainfall-Runoff Relationships and Examines Watershed-Scale Changes,"
J. Hunt, D. Agarwal, and C. van Ingen, Computational Methods in Water Resources, Ecoinformatics Session, San Francisco, CA, July 2008.

"The Extended Metadata Registry (XMDR) Project and Water Resource Modeling,"
J. McCarthy and B. Bargmeyer, Computational Methods in Water Resources, Ecoinformatics Session, San Francisco, CA, July 2008.

"The Fluxdata Data and Collaboration Server (http://www.fluxdata.org),"
D. Agarwal, M. Humphrey, C. van Ingen, N. Beekwilder, M. Goode, K. Jackson, M. Rodriguez, and R. Weber, May, 2008. In preparation.

"An Evolving La Thuile Fluxnet Dataset and Support Infrastructure",
Agarwal, D; Baldocchi, D; Goode, M; Humphreys, M; van Ingen, C; Papale, D; Reichstein, M; Rodriguez, M; Ryu, Y; Vargas, R, Accepted for presentation at European Geosciences Union General Assembly 2008, Vienna, Austria. (LBNL Technical Report LBNL-1764E)Abstract

"EScience Technologies for the Science Data Pipeline",
Catharine van Ingen, Deb Agarwal, James Hunt, Marty Humphrey, Bora Beran, Presented at the British Royal Society Meeting, London, England 2008.

"Connecting Scientists and Data for Synthesis through Collaboration",
Catharine van Ingen, Presented at Microsoft eScience All Hands Meeting 2008, Redmond, Washington.

"Creating and Accessing the Global Fluxnet Data Set",
Marty Humphrey (humphrey@cs.virginia.edu), Norm Beekwilder, Deb Agarwal (daagarwal@lbl.gov), Dennis Baldocchi (baldocchi@nature.berkeley.edu), Monte Goode (MMGoode@lbl.gov), Jayant Gupchup (gupchup@jhu.edu), Catharine van Ingen (vaningen@microsoft.com), Dario Papale (darpap@labecomail.agraria.unitus.it), Markus Reichstein (mreichstein@bgc-jena.mpg.de), Matthew Rodriguez (mar008@cs.ucsd.edu), Youngryel Ryu (yryu@nature.berkeley.edu), Rodrigo Vargas (rvargas@nature.berkeley.edu) and Nolan Li (nli@pha.jhu.edu) Presented at Microsoft eScience All Hands Meeting 2008, Redmond, Washington. (LBNL Technical Report LBNL-1763E)

"A Scalable Water Balance Model Within the Russian River, California, Basin,"
James Hunt, (2007). Eos Trans. American Geophysical Union, 88(52), Fall Meet. Suppl., Abstract, San Francisco, CA (Dec 10, 2007).

"Unifying Diverse Watershed Data to Enable Analysis ,"
Deb Agarwal, Monte Goode, Jayant Gupchup, Jim Hunt, Catharine van Ingen, Rebecca Leonardson, Matt Rodriguez, and Nolan Li, (2007). Eos Trans. American Geophysical Union, 88(52), Fall Meet. Suppl., Abstract H11K, San Francisco, CA (Dec 10, 2007). (LBNL Technical Report LBNL-1272E) (pptx) (pdf).

"Creating and Accessing the Global Fluxnet Data Set,"
Deb Agarwal, Dennis Baldocchi, Tom Boden, Bob Cook, Dorothea Frank, Monte Goode, Jayant Gupchup, Susan Holladay, Marty Humphreys, Catharine van Ingen, Barbara Jackson, Dario Papale, Markus Reichstein, Matthew Rodriguez, Youngryel Ryu, Rodrigo Vargas, Bruce Wilson, and Nolan Li, (2007). Eos Trans. American Geophysical Union, 88(52), Fall Meet. Suppl., Abstract B33E-1657, San Francisco, CA (Dec 12, 2007).

"OLAP Cube Visualization of Hydrologic Data Catalogs",
Zaslavsky, I., Rodriguez, M., Beran, B., Valentine, D., and van Ingen, C. , (2007). Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract H13H-1684

"Data Cubes for Eco-Science Can One Size Fit All?,"
Deb Agarwal and Catharine van Ingen, Microsoft RENCI E-Science Meeting, NC (Oct 22, 2007) (pptx).

"AmeriFlux Data Server User Tutorial,"
Deb Agarwal, Catharine van Ingen, Susan Holladay, and Misha Krassovski, AmeriFlux Annual Meeting, Boulder, CO (Oct 17-18, 2007) (pptx).

"A Next Generation AmeriFlux Network Data Server,"
Deb. Agarwal, Catharine van Ingen, and Susan Holladay, AmeriFlux Annual Meeting, Boulder, CO (Oct 17-18, 2007) (pptx).

"Building a Data Server for Ecological Data,"
Deb Agarwal, University of California, Berkeley, HydroLunch (Sept 2007) (pptx).

" Using the database to rapidly assess FLUXNET data,"
Catharine van Ingen and others, Explores the potential for using simple queries to determining data suitability for cross-site synthesis (July 2007).

"Enabling Carbon Flux Studies at the Regional and Ecosystem Scale,"
Deb Agarwal and Catharine van Ingen, Microsoft Faculty Summit (July 2007) (pptx).

"A Next Generation Flux Network Data Server",
Deb Agarwal, Dennis Baldocchi, and Catharine van Ingen, European Geosciences Union General Assembly 2007, Vienna, Austria, 15-20 April 2007.

"Ameriflux Scientific Data Server Technology Overview,"
Catharine van Ingen, Overview of the bwc.berkeley.edu deployment, our current database schema and some thoughts forward (Dec 2006).

"Early Experience Prototyping a Science Data Server for Environmental Data,"
Catharine van Ingen, Microsoft eScience Workshop at The Johns Hopkins University (Oct 2006).

"Developing a Scientific Collaboration Data Server for Ameriflux,"
Deb Agarwal and Gretchen Miller, Ameriflux Annual Meeting, Boulder, CO (Oct 2006).

"Early Experience Prototyping a Science Data Server for Environmental Data,"
Deb Agarwal and Catharine van Ingen, CITRIS Research Exchange, Berkeley, California, (Sept 2006) (ppt).

"Development of the AmeriFlux Central Valley Data Portals,"
Susan Hubbard, Deb Agarwal, and Catharine van Ingen, BWC proposal for the Microsoft project, Berkeley, California (Feb 2006).

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